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Published in Annals of Applied Statistics, 2020
Simultaneous variable selection and clustering of samples, with adjustment for technical factors like differences in sequencing depth, and covariates like batch.
Recommended citation: D.K. Lim, N.U. Rashid, J.G. Ibrahim (2020). "Model-based Feature Selection and Clustering of RNA-seq Data for Unsupervised Subtype Discovery" Annals of Applied Statistics. http://dx.doi.org/10.1214/20-AOAS1407
Published in arXiv, 2021
Imputation of missing not at random data using a deeply-learned autoencoder.
Recommended citation: D.K. Lim, N.U. Rashid, J.B. Oliva, J.G. Ibrahim (2022). "Unsupervised Imputation of Non-ignorably Missing Data Using Importance-Weighted Autoencoders" arXiv https://arxiv.org/abs/2101.07357
Published in Journal of Computational and Graphical Statistics, 2023
Supervised Learning in the presence of missing not at random data using a deeply-learned neural networks.
Recommended citation: D.K. Lim, N.U. Rashid, J.B. Oliva, J.G. Ibrahim (2023). "Deeply-Learned Generalized Linear Models with Missing Data" Journal of Computational and Graphical Statistics https://www.tandfonline.com/doi/full/10.1080/10618600.2023.2276122
Simultaneous Feature Selection and Clustering of RNA-seq
Non-Ignorably Missing Importance-Weighted Autoencoder
Deeply-Learned Generalized Linear Models with MNAR Missingness